Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 5449
Gene Symbol: POU1F1
POU1F1
0.020 AlteredExpression disease BEFREE This disorder is associated with a thymoma or neoplasm that ectopically expresses PIT-1 protein. 31513261 2020
Entrez Id: 6574
Gene Symbol: SLC20A1
SLC20A1
0.020 AlteredExpression disease BEFREE This disorder is associated with a thymoma or neoplasm that ectopically expresses PIT-1 protein. 31513261 2020
Entrez Id: 27164
Gene Symbol: SALL3
SALL3
0.010 Biomarker disease BEFREE No significant differences were observed in the promoter methylation of GNG4, HOXD9, or SALL3 between thymoma and the thymus. 31746370 2020
Entrez Id: 123
Gene Symbol: PLIN2
PLIN2
0.010 AlteredExpression disease BEFREE To this end we screened 35 normal and 23 hyperplastic thymuses, 127 thymomas and 41 thymic carcinomas for the presence of sebaceous differentiation as defined by morphology and expression of adipophilin and androgen receptor (AR). 31401665 2020
Entrez Id: 64344
Gene Symbol: HIF3A
HIF3A
0.010 AlteredExpression disease BEFREE HIF3A is aberrantly expressed in patient with thymoma who has myasthenia gravis and may be involved in the development of myasthenia gravis in thymoma patient. 31809976 2020
Entrez Id: 51435
Gene Symbol: SCARA3
SCARA3
0.010 AlteredExpression disease BEFREE At quantitative assessment, both the radiodensity and CSR were significantly higher for thymoma compared with nonthymoma groups (<i>P</i> < .001). 31331197 2020
Entrez Id: 3484
Gene Symbol: IGFBP1
IGFBP1
0.010 AlteredExpression disease BEFREE The four genes, hypoxia-inducible factor 3 alpha (HIF3A), insulin-like growth factor-binding protein 1, pyruvate dehydrogenase kinase, and Krüppel-like factor 15 were differentially expressed in patients with thymoma who has myasthenia gravis and were validated by quantitative polymerase chain reaction. 31809976 2020
Entrez Id: 2693
Gene Symbol: GHSR
GHSR
0.010 Biomarker disease BEFREE However, epigenetic alterations in the 3 genes, apart from GHSR, are not involved in the tumorigenesis of thymoma. 31746370 2020
Entrez Id: 10934
Gene Symbol: MORF4
MORF4
0.010 AlteredExpression disease BEFREE At quantitative assessment, both the radiodensity and CSR were significantly higher for thymoma compared with nonthymoma groups (<i>P</i> < .001). 31331197 2020
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.360 GeneticVariation disease BEFREE Out of 33 TGCA studies, the effects of TP53 mutations were statistically significant in nine cancers (lung adenocarcinoma, hepatocellular carcinoma, head and neck squamous cell carcinoma, acute myeloid leukemia, clear cell renal cell carcinoma (RCC), papillary RCC, chromophobe RCC, uterine endometrial carcinoma, and thymoma) for survival time and in five cancers (pancreatic adenocarcinoma, hepatocellular carcinoma, chromophobe RCC, acute myeloid leukemia, and thymoma) for disease-free survival time. 30542790 2019
Entrez Id: 29126
Gene Symbol: CD274
CD274
0.090 Biomarker disease BEFREE Mechanism investigations revealed that RP11-424C20.2/UHRF1 axis regulated immune escape of LIHC and THYM at least partly through IFN-γ-mediated CLTA-4 and PD-L1 pathway. 31442209 2019
Entrez Id: 29126
Gene Symbol: CD274
CD274
0.090 AlteredExpression disease BEFREE Thus, the number of cases with PD-L1 expression and the percent expression of PD-L1 were significantly higher in more aggressive thymomas (type B2 or B3). 31683962 2019
Entrez Id: 29126
Gene Symbol: CD274
CD274
0.090 Biomarker disease BEFREE The PD-L1 positivity was significantly associated with type B2 and B3 thymoma (p < 0.001) and stage III and IV disease (p = 0.048). 30312607 2019
Entrez Id: 29126
Gene Symbol: CD274
CD274
0.090 AlteredExpression disease BEFREE Multivariate analysis revealed that PD-L1<sup>high</sup> expression was an independent poor prognostic factor (<i>p</i> = 0.047, HR 2.087, 95% CI, 1.009-4.318) in thymomas. 31681591 2019
Entrez Id: 2475
Gene Symbol: MTOR
MTOR
0.040 AlteredExpression disease BEFREE Heat exposure increased the phosphorylation levels of thymoma viral proto-oncogene 1 (Akt), mammalian target of rapamycin (mTOR), eukaryotic translation initiation factor 4E binding protein 1 (Eif4ebp1), and ribosomal protein S6 kinase, polypeptide 1 (S6K1). 30652078 2019
Entrez Id: 5594
Gene Symbol: MAPK1
MAPK1
0.030 AlteredExpression disease BEFREE In experimental models of disease, the carotenoid astaxanthin has been shown to modulate autophagy by regulating signaling pathways, including the AMP-activated protein kinase (AMPK), cellular homolog of murine thymoma virus akt8 oncogene (Akt), and mitogen-activated protein kinase (MAPK), such as c-Jun N-terminal kinase (JNK) and p38. 31547619 2019
Entrez Id: 3479
Gene Symbol: IGF1
IGF1
0.020 AlteredExpression disease BEFREE In IHC results, SOX2 (HR: 7.57, P = 0.001) and IGF-1 (HR: 9.43, P = 0.001) expression levels in TC were significantly higher than those in TM. 31097100 2019
Entrez Id: 3600
Gene Symbol: IL15
IL15
0.020 AlteredExpression disease BEFREE There were no statistically significant differences between IL-15 serum levels in MG patients in comparison with controls as well as between subgroups of MG patients (early vs. late onset and thymoma MG). 29699793 2019
Entrez Id: 6198
Gene Symbol: RPS6KB1
RPS6KB1
0.010 AlteredExpression disease BEFREE Heat exposure increased the phosphorylation levels of thymoma viral proto-oncogene 1 (Akt), mammalian target of rapamycin (mTOR), eukaryotic translation initiation factor 4E binding protein 1 (Eif4ebp1), and ribosomal protein S6 kinase, polypeptide 1 (S6K1). 30652078 2019
Entrez Id: 6657
Gene Symbol: SOX2
SOX2
0.010 AlteredExpression disease BEFREE In IHC results, SOX2 (HR: 7.57, P = 0.001) and IGF-1 (HR: 9.43, P = 0.001) expression levels in TC were significantly higher than those in TM. 31097100 2019
Entrez Id: 1398
Gene Symbol: CRK
CRK
0.010 AlteredExpression disease BEFREE In experimental models of disease, the carotenoid astaxanthin has been shown to modulate autophagy by regulating signaling pathways, including the AMP-activated protein kinase (AMPK), cellular homolog of murine thymoma virus akt8 oncogene (Akt), and mitogen-activated protein kinase (MAPK), such as c-Jun N-terminal kinase (JNK) and p38. 31547619 2019
Entrez Id: 648
Gene Symbol: BMI1
BMI1
0.010 AlteredExpression disease BEFREE Gankyrin deficiency decreased the expression of Bmi1, a downstream molecule of c-Myc, and the activity of V-Akt murine thymoma viral oncogene homolog and extracellular signal-regulated protein kinase, leading to reduced Apc inactivation-induced tumorigenesis. 30513515 2019
Entrez Id: 26121
Gene Symbol: PRPF31
PRPF31
0.010 Biomarker disease BEFREE Mechanism investigations revealed that RP11-424C20.2/UHRF1 axis regulated immune escape of LIHC and THYM at least partly through IFN-γ-mediated CLTA-4 and PD-L1 pathway. 31442209 2019
Entrez Id: 6194
Gene Symbol: RPS6
RPS6
0.010 AlteredExpression disease BEFREE Heat exposure increased the phosphorylation levels of thymoma viral proto-oncogene 1 (Akt), mammalian target of rapamycin (mTOR), eukaryotic translation initiation factor 4E binding protein 1 (Eif4ebp1), and ribosomal protein S6 kinase, polypeptide 1 (S6K1). 30652078 2019
Entrez Id: 6370
Gene Symbol: CCL25
CCL25
0.010 AlteredExpression disease BEFREE Real-time PCR analysis confirmed that CCL25 was upregulated; and MYC, GADD45B, TNFRSF12 downregulated in thymoma with MG. Our study thus provided important genetic information on thymoma. 30787364 2019